Ticket #1938: xmvnm000.xmvnm.d16221.t150310.leave

File xmvnm000.xmvnm.d16221.t150310.leave, 9.0 KB (added by earhg, 4 years ago)
Line 
1## WARNING!
2## The current directory is in your home directory. Please use the high-performance
3## cluster filesystem /nobackup. See documentation for information.
4## WARNING!
5
6## Hosts assigned to job 4949165.1:
7##
8## g11s8n2.polaris.leeds.ac.uk 16 slots
9## g11s9n1.polaris.leeds.ac.uk 16 slots
10## g11s9n3.polaris.leeds.ac.uk 16 slots
11##
12## Resources granted:
13##
14## h_vmem = 4G (per slot)
15## h_rt   = 01:00:00
16
17## nodes/ppn parallel request:
18##
19## nodes = 3     np  = 18   
20## ppn   = 8     tpp = 2   
21
22ModuleCmd_Switch.c(172):ERROR:152: Module 'intelmpi/4.1.0.024' is currently not loaded
23Currently Loaded Modulefiles:
24  1) licenses           4) intel/12.1.5.339   7) user
25  2) sge                5) openmpi/1.6.5
26  3) bit/64             6) leeds
27*****************************************************************
28     Version 8.4 template, Unified Model ,  Non-Operational
29     Created by UMUI version 8.4                       
30*****************************************************************
31Host is g11s8n2.polaris.leeds.ac.uk
32PATH used = /services/sge_prod/default/common/leeds/pe/bin:/scratch/4949165.1.polaris1.q:/scratch/4949163.1.polaris1.q:/home/polaris_lds1/earhum/fcm/bin:/apps/mpi/bin:/apps/developers/libraries/openmpi/1.6.5/1/bit-64-intel-12.1.5.339/bin:/apps/developers/compilers/intel/12.1.5.339/1/default/bin/intel64:/services/sge_prod/bin/lx-amd64:/services/sge_prod/default/common/leeds/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/apps/bin:/home/polaris_lds1/earhum/vn8.4/sgi/utils:/home/polaris_lds1/earhum/vn8.4/sgi/utils:/nobackup/earhg/xmvnm/bin:/home/polaris_lds1/earhum/vn8.4/sgi/scripts:/home/polaris_lds1/earhum/vn8.4/sgi/exec
33*****************************************************************
34*****************************************************************
35     Job started at : Mon Aug  8 15:20:01 BST 2016
36*****************************************************************
37*****************************************************************
38     Run started from UMUI
39HadGEM3-GA4.0 Polaris
40This job is using UM directory /home/polaris_lds1/earhum,
41-------------------------------
42Processing STASHC file for ROSE
43-------------------------------
44Backup of STASHC file created!
45/nobackup/earhg/tmp/tmp.polaris.95817/xmvnm.stashc_preROSE
46-------------------------------
47Processing STASHC file complete
48-------------------------------
49***************************************************************
50   Starting script :   qsatmos
51   Starting time   :   Mon Aug  8 15:20:01 BST 2016
52***************************************************************
53
54
55/nobackup/earhg/xmvnm/bin/qsatmos: Executing model run
56
57*********************************************************
58UM Executable : /nobackup/earhg/xmvnm/umatmos/bin/xmvnm.exe
59*********************************************************
60
61
62/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: syntax error near unexpected token `='() {  eval `/apps/Modules/$MODULE_VERSION/bin/modulecmd bash $*`
63}''
64/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: `}''
65/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: syntax error near unexpected token `='() {  eval `/apps/Modules/$MODULE_VERSION/bin/modulecmd bash $*`
66}''
67/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: `}''
68/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: syntax error near unexpected token `='() {  eval `/apps/Modules/$MODULE_VERSION/bin/modulecmd bash $*`
69}''
70/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: `}''
71/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: syntax error near unexpected token `='() {  eval `/apps/Modules/$MODULE_VERSION/bin/modulecmd bash $*`
72}''
73/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: `}''
74/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: syntax error near unexpected token `='() {  eval `/apps/Modules/$MODULE_VERSION/bin/modulecmd bash $*`
75}''
76/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: `}''
77/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: syntax error near unexpected token `='() {  eval `/apps/Modules/$MODULE_VERSION/bin/modulecmd bash $*`
78}''
79/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: `}''
80/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: syntax error near unexpected token `='() {  eval `/apps/Modules/$MODULE_VERSION/bin/modulecmd bash $*`
81}''
82/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: `}''
83/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: syntax error near unexpected token `='() {  eval `/apps/Modules/$MODULE_VERSION/bin/modulecmd bash $*`
84}''
85/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: `}''
86/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: syntax error near unexpected token `='() {  eval `/apps/Modules/$MODULE_VERSION/bin/modulecmd bash $*`
87}''
88/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: `}''
89/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: syntax error near unexpected token `='() {  eval `/apps/Modules/$MODULE_VERSION/bin/modulecmd bash $*`
90}''
91/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: `}''
92/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: syntax error near unexpected token `='() {  eval `/apps/Modules/$MODULE_VERSION/bin/modulecmd bash $*`
93}''
94/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: `}''
95/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: syntax error near unexpected token `='() {  eval `/apps/Modules/$MODULE_VERSION/bin/modulecmd bash $*`
96}''
97/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: `}''
98/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: syntax error near unexpected token `='() {  eval `/apps/Modules/$MODULE_VERSION/bin/modulecmd bash $*`
99}''
100/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: `}''
101/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: syntax error near unexpected token `='() {  eval `/apps/Modules/$MODULE_VERSION/bin/modulecmd bash $*`
102}''
103/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: `}''
104/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: syntax error near unexpected token `='() {  eval `/apps/Modules/$MODULE_VERSION/bin/modulecmd bash $*`
105}''
106/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: `}''
107/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: syntax error near unexpected token `='() {  eval `/apps/Modules/$MODULE_VERSION/bin/modulecmd bash $*`
108}''
109/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: `}''
110/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: syntax error near unexpected token `='() {  eval `/apps/Modules/$MODULE_VERSION/bin/modulecmd bash $*`
111}''
112/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: `}''
113/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: syntax error near unexpected token `='() {  eval `/apps/Modules/$MODULE_VERSION/bin/modulecmd bash $*`
114}''
115/nobackup/earhg/xmvnm/xmvnm.parexe.95854: line 48: `}''
116--------------------------------------------------------------------------
117mpirun noticed that the job aborted, but has no info as to the process
118that caused that situation.
119--------------------------------------------------------------------------
120xmvnm: Run failed
121*****************************************************************
122   Ending script   :   qsatmos
123   Completion code :   2
124   Completion time :   Mon Aug  8 15:20:03 BST 2016
125*****************************************************************
126
127
128/nobackup/earhg/xmvnm/bin/qsmaster: Failed in qsatmos in job xmvnm
129***************************************************************
130   Starting script :   qsfinal
131   Starting time   :   Mon Aug  8 15:20:03 BST 2016
132***************************************************************
133
134Checking requirement for atmosphere resubmit...
135/nobackup/earhg/xmvnm/bin/qsresubmit: Error: no resubmit details found
136*****************************************************************
137   Ending script   :   qsfinal
138   Completion code :   0
139   Completion time :   Mon Aug  8 15:20:03 BST 2016
140*****************************************************************
141
142
143/nobackup/earhg/xmvnm/bin/qsmaster: Failed in qsfinal in job xmvnm
144 <<<< Information about How Many Lines of Output follow >>>>
145 8  lines in main OUTPUT file.
146 0 lines of O/P from pe0.
147 <<<<         Lines of Output Information ends          >>>>
148
149
150 ==============================================================================
151 =================================== OUTPUT ===================================
152 ==============================================================================
153
154 UMUI Namelist output in /nobackup/earhg/xmvnm/xmvnm.umui.nl
155 DATAW/DATAM file listing in /nobackup/earhg/xmvnm/xmvnm.list
156 STASH output should be in /nobackup/earhg/xmvnm/xmvnm.stash
157
158 
159 ==============================================================================
160 =============================== UM RUN OUTPUT ================================
161 ==============================================================================
162
163qsatmos: %MODEL% output follows:-
164
165qsatmos: Stack requested for UM job:  GB
1660+1 records in
1670+1 records out
168322 bytes (322 B) copied, 0.00220882 s, 146 kB/s
169*****************************************************************
170****************************************************************
171     Job ended at :  Mon Aug  8 15:20:03 BST 2016
172****************************************************************
173*****************************************************************
174