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Ticket Resolution Summary Owner Reporter
#3236 fixed ILAMB not working on JASMIN pmcguire pmcguire
Description

Hello CMS Helpdesk ILAMB doesn't appear to be working on JASMIN anymore. For example, the suite ~/pmcguire/roses/u-bb897GL5a_IF2 no longer works, and has these errors in the job.err file:

ilamb-runilamb-run:: RRank 0:2ank 0:4:: MMPI_Init_threadPI_Init_thread:: ilamb-runUU:nable to open nable to open Ropt/platform_mpi/lib/linux_amd64/libcoll.so: undefined symbol: hpmp_comm_worldopt/platform_mpi/lib/linux_amd64/libcoll.so: undefined symbol: hpmp_comm_worldank 0:6 :- running with failsafe mpi collective algorithms.

  • running with failsafe mpi collective algorithms.

MPI_Init_thread: ilamb-runUnable to open :/ opt/platform_mpi/lib/linux_amd64/libcoll.so: undefined symbol: hpmp_comm_worldR ank 0:3- running with failsafe mpi collective algorithms.

: MPI_Init_thread: ilamb-runUnable to open :/ opt/platform_mpi/lib/linux_amd64/libcoll.so: undefined symbol: hpmp_comm_worldR ank 0:5- running with failsafe mpi collective algorithms.

: MPI_Init_thread: ilamb-runUnable to open :/ opt/platform_mpi/lib/linux_amd64/libcoll.so: undefined symbol: hpmp_comm_worldR ank 0:1- running with failsafe mpi collective algorithms.

: MPI_Init_thread: ilamb-runUnable to open :/ opt/platform_mpi/lib/linux_amd64/libcoll.so: undefined symbol: hpmp_comm_worldR ank 0:7- running with failsafe mpi collective algorithms.

: MPI_Init_thread: ilamb-runU:nable to open /Ropt/platform_mpi/lib/linux_amd64/libcoll.so: undefined symbol: hpmp_comm_worldank 0:0 :- running with failsafe mpi collective algorithms.

MPI_Init_thread: Unable to open /opt/platform_mpi/lib/linux_amd64/libcoll.so: undefined symbol: hpmp_comm_world - running with failsafe mpi collective algorithms.

Traceback (most recent call last):

File "/usr/bin/ilamb-run", line 555, in <module>

WorkPost(M,C,W,S,not args.quiet,args.skip_plots)

File "/usr/bin/ilamb-run", line 392, in WorkPost

S.createHtml(M)

File "/usr/lib/python2.7/site-packages/ILAMB/Scoreboard.py", line 274, in createHtml

rel_tree = GenerateRelationshipTree(self,M)

File "/usr/lib/python2.7/site-packages/ILAMB/Scoreboard.py", line 660, in GenerateRelationshipTree

h2 = Node(data.confrontation.longname)

AttributeError: 'NoneType' object has no attribute 'longname'

User defined signal 2

MPI Application rank 3 killed before MPI_Finalize() with signal 12

mpirun: propagating signal 12

2020-03-27T11:52:58Z CRITICAL - failed/SIGUSR2

This suite is identical to a previously-run suite ~/pmcguire/roses/u-bb897GL5a_IF, which had run successfully weeks ago. The suite is a descendent of the MOSRS suite u-bb897.

Do you know what the problem is? Patrick McGuire

#3235 fixed TERM_RUNLIMIT JULES pmcguire NoelClancy
Description

job.err User defined signal 2 MPI Application rank 5 killed before MPI_Finalize() with signal 12 mpirun: propagating signal 12 2020-03-24T21:45:47Z CRITICAL - failed/SIGUSR2

job.out TERM_RUNLIMIT: job killed after reaching LSF run time limit. Exited with exit code 1.

Resource usage summary:

CPU time : 171298.00 sec. Max Memory : 426 MB Average Memory : 423.91 MB Total Requested Memory : - Delta Memory : - Max Swap : 8483 MB Max Processes : 24 Max Threads : 26 Run time : 10802 sec. Turnaround time : 12257 sec.

#3234 answered ERA5-nudged model um_support s1895566
Description

Is there any ERA5-nudged model available on Monsoon? Thanks!

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