Opened 8 years ago
Closed 8 years ago
#1060 closed help (fixed)
qsub umuisubmit_clr not being found
Reported by: | Emma_Turner | Owned by: | willie |
---|---|---|---|
Component: | UM Model | Keywords: | |
Cc: | Platform: | HECToR | |
UM Version: | 6.6.3 |
Description
Hello,
I just submitted a HadGEM2-A job, that has worked in the past (last week) and it is extracting fine, but after the extract I am encountering the below error which I don't understand:
FCM_MAIN: Submitting umuisubmit_clr …
qsub: script file:: No such file or directory
FCM_MAIN: Submit failed
Can you help?
Many thanks
Emma
Change History (17)
comment:1 Changed 8 years ago by willie
- Owner changed from um_support to willie
- Status changed from new to accepted
comment:2 Changed 8 years ago by Emma_Turner
Hi Willie,
The job id is xihtea.
Thanks
Emma
comment:3 Changed 8 years ago by willie
Now that I have d43 access, could you let me have read permission on your home directory
chmod -R g+rX /home/d43/d43/eturner
Thanks,
Willie
comment:4 Changed 8 years ago by Emma_Turner
Hi Willie,
My directory I work in is /home/d43/d43-geos-climate/eturner instead of /home/d43/d43/eturner
I just ran the chmod command.
Thanks
Emma
comment:5 Changed 8 years ago by willie
I can't see any leave files for xihte?
Willie
comment:6 Changed 8 years ago by Emma_Turner
I think that is because it couldn't submit before it got to that point?
Emma
comment:7 Changed 8 years ago by Emma_Turner
The record of the attempted xihte runs are in /home/d43/d43-geos-climate/eturner/umui_runs
comment:8 Changed 8 years ago by willie
Hi Emma,
I copied your job and tried it. The submit is OK and it compiled giving a comp.leave file and it is now running. My .leave files are in /home/n02/n02/wmcginty/output. You could try submitting it again.
Regards
Willie
comment:9 Changed 8 years ago by Emma_Turner
How strange. I tried a few times. I think it must be something to do with HECToR.. I'll try again.
Thanks
Emma
comment:10 Changed 8 years ago by Emma_Turner
Hi Willie,
I tried with this job and previous jobs that have run fine and am encountering the same error with the qsub script file. So I think something must have changed in my setup, what I don't know.. Do you know where the qsub script file should be so I can try and understand why it isn't finding it?
Thanks
Emma
comment:11 Changed 8 years ago by willie
Hi Emma,
Could you let me have read permission on your .profile and .kshrc files: they'll be in your home directory.
Regards,
Willie
comment:12 Changed 8 years ago by Emma_Turner
Hi Willie,
I didn't know if you meant on HECToR or PUMA but I've done both for the .profile I don't think I have a .kshrc file.
Thanks
Emma
comment:13 Changed 8 years ago by willie
Hi Emma,
It's the HECToR side, I think /home/d43/d43/eturner/.profile
could you let me have read permission on that please.
regards,
Willie
comment:14 Changed 8 years ago by Emma_Turner
The directory I use is /home/d43/d43-geos-climate/eturner not /home/d43/d43/eturner I think there should be read access now.
Emma
comment:15 Changed 8 years ago by willie
Hi Emma. You have several .profile files some of which are links to others.
Could you check the file /home/d43/d43/eturner/.profile, as I believe it is the one you are using. Make sure it contains the following lines,
# Set up UM environment variables UMDIR=/work/n02/n02/hum TARGET_MC=cce export VN=6.6.3 # Setup UM variables if [ -f $HOME/.umsetvars_$VN ] then . $HOME/.umsetvars_$VN else . $UMDIR/hg$VN/$TARGET_MC/scripts/.umsetvars_$VN fi # loadcomp is a UM utility to change compilers. . $UMDIR/bin/loadcomp loadcomp $TARGET_MC
Regards,
Willie
comment:16 Changed 8 years ago by Emma_Turner
Hi Willie,
You were right, we had a legacy problem from when my home was in the d43 space, and I didn't realise the .profile was still linked to it. I unlinked it, copied the lines into the the d43-geos-climate .profile and it it running correctly now.
Many thanks!
Emma
comment:17 Changed 8 years ago by willie
- Resolution set to fixed
- Status changed from accepted to closed
Hi Emma,
What is the job id?
Regards
Willie