Opened 6 years ago

Closed 6 years ago

#1060 closed help (fixed)

qsub umuisubmit_clr not being found

Reported by: Emma_Turner Owned by: willie
Component: UM Model Keywords:
Cc: Platform: HECToR
UM Version: 6.6.3

Description

Hello,

I just submitted a HadGEM2-A job, that has worked in the past (last week) and it is extracting fine, but after the extract I am encountering the below error which I don't understand:

FCM_MAIN: Submitting umuisubmit_clr …
qsub: script file:: No such file or directory
FCM_MAIN: Submit failed

Can you help?

Many thanks
Emma

Change History (17)

comment:1 Changed 6 years ago by willie

  • Owner changed from um_support to willie
  • Status changed from new to accepted

Hi Emma,

What is the job id?

Regards
Willie

comment:2 Changed 6 years ago by Emma_Turner

Hi Willie,

The job id is xihtea.

Thanks
Emma

comment:3 Changed 6 years ago by willie

Now that I have d43 access, could you let me have read permission on your home directory

chmod -R g+rX /home/d43/d43/eturner

Thanks,
Willie

comment:4 Changed 6 years ago by Emma_Turner

Hi Willie,

My directory I work in is /home/d43/d43-geos-climate/eturner instead of /home/d43/d43/eturner

I just ran the chmod command.

Thanks
Emma

comment:5 Changed 6 years ago by willie

I can't see any leave files for xihte?

Willie

comment:6 Changed 6 years ago by Emma_Turner

I think that is because it couldn't submit before it got to that point?

Emma

comment:7 Changed 6 years ago by Emma_Turner

The record of the attempted xihte runs are in /home/d43/d43-geos-climate/eturner/umui_runs

comment:8 Changed 6 years ago by willie

Hi Emma,
I copied your job and tried it. The submit is OK and it compiled giving a comp.leave file and it is now running. My .leave files are in /home/n02/n02/wmcginty/output. You could try submitting it again.

Regards
Willie

comment:9 Changed 6 years ago by Emma_Turner

How strange. I tried a few times. I think it must be something to do with HECToR.. I'll try again.

Thanks
Emma

comment:10 Changed 6 years ago by Emma_Turner

Hi Willie,

I tried with this job and previous jobs that have run fine and am encountering the same error with the qsub script file. So I think something must have changed in my setup, what I don't know.. Do you know where the qsub script file should be so I can try and understand why it isn't finding it?

Thanks
Emma

comment:11 Changed 6 years ago by willie

Hi Emma,

Could you let me have read permission on your .profile and .kshrc files: they'll be in your home directory.

Regards,
Willie

comment:12 Changed 6 years ago by Emma_Turner

Hi Willie,

I didn't know if you meant on HECToR or PUMA but I've done both for the .profile I don't think I have a .kshrc file.

Thanks
Emma

comment:13 Changed 6 years ago by willie

Hi Emma,

It's the HECToR side, I think /home/d43/d43/eturner/.profile

could you let me have read permission on that please.

regards,
Willie

comment:14 Changed 6 years ago by Emma_Turner

The directory I use is /home/d43/d43-geos-climate/eturner not /home/d43/d43/eturner I think there should be read access now.

Emma

comment:15 Changed 6 years ago by willie

Hi Emma. You have several .profile files some of which are links to others.

Could you check the file /home/d43/d43/eturner/.profile, as I believe it is the one you are using. Make sure it contains the following lines,

# Set up UM environment variables

UMDIR=/work/n02/n02/hum
TARGET_MC=cce

export VN=6.6.3

# Setup UM variables

if [ -f $HOME/.umsetvars_$VN ]
then
  . $HOME/.umsetvars_$VN
else
  . $UMDIR/hg$VN/$TARGET_MC/scripts/.umsetvars_$VN
fi

# loadcomp is a UM utility to change compilers.

. $UMDIR/bin/loadcomp
loadcomp $TARGET_MC

Regards,
Willie

comment:16 Changed 6 years ago by Emma_Turner

Hi Willie,

You were right, we had a legacy problem from when my home was in the d43 space, and I didn't realise the .profile was still linked to it. I unlinked it, copied the lines into the the d43-geos-climate .profile and it it running correctly now.

Many thanks!
Emma

comment:17 Changed 6 years ago by willie

  • Resolution set to fixed
  • Status changed from accepted to closed
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