Opened 3 years ago

Closed 3 years ago

#2009 closed help (fixed)

qsub: script file:: No such file or directory MAIN_SCR: Submit failed

Reported by: Alcide.Zhao Owned by: ros
Component: UMUI Keywords:
Cc: Platform: PUMA
UM Version: 8.2

Description

Hi

I'm doing the UM tutorial. my job ID is xmzde. I submited my job as a CRUN, to run on ARCHER using the umui on PUMA. However, when I press the submit button in the umui, I receive the following error:
qsub: script file:: No such file or directory
MAIN_SCR: Submit failed

My archer ID is alcide

BTW- When I check my setups, there a lot of STASH errors show up. This might be a problem of diagnostics? I checked my personal detail setting under user information and submit methods>General information, and teses are all fine. However, I am not sure what I should type on Account name?

Can you see anything that I might have done wrong?
Cheers,
Alcide Zhao

Change History (13)

comment:1 Changed 3 years ago by ros

Hi Alcide,

Please give us permission to view your files on ARCHER:

chmod -R g+rX /home/n02/n02/alcide
chmod -R g+rX /work/n02/n02/alcide

We've added you to the budget n02-chem please use this as the Account name for your runs.

What version of the UM will you be using in your PhD?

Cheers,
Ros.

comment:2 Changed 3 years ago by ros

  • Owner changed from um_support to ros
  • Status changed from new to accepted

comment:3 Changed 3 years ago by Alcide.Zhao

Dear Ros

Thank you for your help. I have authorized the permission for you.

To now, I am not sure what version I am going to use, but please keep options open for me.

Cheers, Alcide

comment:4 Changed 3 years ago by ros

Hi Alcide,

Could you please copy me all the messages that appear in the UMUI submission window as I need more information? Your job submits ok for me so I'm guessing it's something to do with your environment/setup.

The reason I was asking about UM version was purely because you're going through our UM training based on the UMUI (up to UM version 8.x) and you're also down to come on the training course in a couple of weeks which is the Rose/Cylc equivalent (replacement for UMUI at UM versions 10.x plus) of what you're currently working through.

Regards,
Ros.

comment:5 Changed 3 years ago by Alcide.Zhao

Sure, Please see following for details
#######################################################################
Calling MAIN_SCR - local…
(This may take several minutes.)

MAIN_SCR: Calling Extract …
Extracting UMSCRIPTS including any branches…
UMSCRIPTS extract is OK
Extracting UMATMOS including any branches…
UMATMOS extract is OK
MAIN_SCR: Extract OK


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agreed to by all registered users and are thus subject to the provisions of the
Computer Misuse Act, 1990 under which unauthorised use is a criminal offence.

If you are not authorised to use this service you must disconnect immediately.


qsub: script file:: No such file or directory
MAIN_SCR: Submit failed

Your job directory on host login.archer.ac.uk is: /home/n02/n02/alcide/umui_runs/xmzde-301112531

umui_runs/xmzde-301112531/SUBMIT[29]: .[2]: rt: not found [No such file or directory]
umui_runs/xmzde-301112531/SUBMIT[29]: .[10]: .: /vn8.2/cce/scripts/.umsetvars_8.2: cannot open [No such file or directory]
#######################################################################

comment:6 Changed 3 years ago by ros

Hi Alcide,

Please copy the standard .profile on ARCHER as yours has some mistakes in it and thus has been unable to setup the UM environment correctly for you.

archer$ cp /work/y07/y07/umshared/um-training/.profile ~/.profile

Hopefully that will fix the problem.

Regards,
Ros.

comment:7 Changed 3 years ago by Alcide.Zhao

Hi ros,

Thank you. I tried to copy that file, nut was permission denied. Can you please help em with that?

Cheers, Alcide

comment:8 Changed 3 years ago by ros

Hi Alcide,

I've sent an email to ARCHER asking them to add you to the umshared group. I'll let you know when they've done that.

Cheers,
Ros.

comment:9 Changed 3 years ago by ros

Hi Alcide,

ARCHER have now added you to the required group so you should now be able to see the /work/y07/y07/umshared directory.

Cheers,
Ros.

comment:10 Changed 3 years ago by Alcide.Zhao

Hi ros,

Thank you for your help, I can now submit my jobs successfully. So, it should be a problem of the .profile file.

Cheers, Alcide

comment:11 Changed 3 years ago by Alcide.Zhao

Dear Ros

I am doing the UKCA tutorial on ARCHER, with job xjrna (copied as xmzia). I can now submit the job smoothly. However, I got only the .rcf.leave and .cmp.leave files after running. I checked up the .rcf.leave file, it reads "ERROR: the Ancil filenames version /work/n02/n02/karthee/ancil_versions/filenames_UM8.2_invert_rivers not found". I then changed to /work/n02/n02/karthee and found no anci_versions directory.

So, can you please help me with this problem ?

Cheer, Alcide

comment:12 Changed 3 years ago by ros

Hi Alcide,

Sorry, this directory unfortunately got deleted during a cleanup to create space on /work. We are working on retrieving it and will let you know when we have it back.

Regards,
Ros.

comment:13 Changed 3 years ago by ros

  • Resolution set to fixed
  • Status changed from accepted to closed

Hi Alcide,

Sorry forgot to update you on this. The missing file is now located at: /work/n02/n02/ukca/ancil_versions/versions_UM8.2_invert_rivers

Regards,
Ros.

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