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#2146 closed help (fixed)

can't run UKCA tutorial

Reported by:	ajamieson	Owned by:	um_support
Priority:	normal	Component:	UKCA
Keywords:		Cc:
Platform:		UM Version:	8.4

Description

Dear CMS,

I'm trying to run the vn8.4 UKCA tutorial (alongside the UKCA jobs). I've changed some of the prognostic initialisations and the start dumps because the directory it was set to no longer exists (it now matches xlavb). I've also added ATP_ENABLED = 1.

The job builds, reconfigures and seems to run fine, but then I check the .pa file created and it is empty (there should be 1 field, ozone mixing ratio). I'm not sure why this is, in the past when this issues occurred it mean I couldn't add any of my own STASH requests without the same thing happening.

I've followed the advice on ticket #1697 (turn off rebuilds) in jobbed: xnigc, the issue occurs in the exact same way as when rebuilds are on (xnigb)

This is the output from xnigc000.xnigc.d17096.t150850.leave

*********************************************************
UM Executable : /work/n02/n02/acjam/xnigc/bin/xnigc.exe
*********************************************************

Application 26056564 is crashing. ATP analysis proceeding...

ATP Stack walkback for Rank 68 starting:
  [empty]@0xffffffffffffffff
  _cray$mt_start_one_code_parallel@0x1906fa9
  glue_rad__cray$mt$p0002@glue_rad.f90:4906
  r2_lwrad3z_@r2_lwrad3z.f90:1428
  radiance_calc_@radiance_calc.f90:1654
  ukca_radaer_compute_aod_@ukca_radaer_compute_aod.f90:338
ATP Stack walkback for Rank 68 done
Process died with signal 11: 'Segmentation fault'
Forcing core dumps of ranks 68, 0
View application merged backtrace tree with: stat-view atpMergedBT.dot
You may need to: module load stat

_pmiu_daemon(SIGCHLD): [NID 00289] [c1-0c1s8n1] [Thu Apr  6 16:02:01 2017] PE RANK 88 exit signal Killed
_pmiu_daemon(SIGCHLD): [NID 00285] [c1-0c1s7n1] [Thu Apr  6 16:02:01 2017] PE RANK 48 exit signal Killed
_pmiu_daemon(SIGCHLD): [NID 00278] [c1-0c1s5n2] [Thu Apr  6 16:02:01 2017] PE RANK 12 exit signal Killed
_pmiu_daemon(SIGCHLD): [NID 00287] [c1-0c1s7n3] [Thu Apr  6 16:02:01 2017] PE RANK 77 exit signal Killed
[NID 00278] 2017-04-06 16:02:01 Apid 26056564: initiated application termination
xnigc: Run failed

Any help would be greatly appreciated.
Thanks,
Andrew

Change History (5)

comment:1 Changed 4 months ago by luke

Hi Andrew,

Is this still an issue?

Sorry for the delay in looking into this.

Best wishes,
Luke

comment:2 Changed 3 months ago by ajamieson

Hi Luke,

It was the last time I tried a run, which was about 3 weeks ago

Thanks.
Andrew

comment:3 Changed 3 months ago by luke

Hi Andrew,

Sorry again for the delay. I've found a couple of issues (over and above the ones you've fixed to do with the ancil versions), which are in the base tutorial job, so thanks for this.

The initialisation files for the chemistry and aerosol are missing, as they have been deleted from Karthee's directory. I've copied these to /work/n02/n02/ukca/initial/N96L85

The RADAER namelists were not in the new format, and were pointing to the wrong directory.
It is this problem that was causing your job to fail.

The relevant differences between your job and mine are below. Please see my xlqee.

Many thanks,
Luke

Job xlqee Title cp v: cp xnigc 2017-06-01: copy of b - prebuilds off
Job xnigc Title copy of b - prebuilds off

Difference in window subindep_HandEdit
 -> Model Selection
   -> Input/Output Control and Resources
     -> User hand edit files
Differences in Table Hand edits
 10c10
<  ~karthee/umui_jobs/hand-edits/raderv2_vn84.ed N
---
>  ~karthee/umui_jobs/hand-edits/raderv2_vn84.ed Y
13d12
<  ~ukca/hand_edits/VN8.4/raderv2.1_vn84_ARCHER.ed Y


Difference in window atmos_Science_Section_UKCA_Rad
 -> Model Selection
   -> Atmosphere
     -> Scientific Parameters and Sections
       -> Section by section choices
         -> Section 34: UKCA Chemistry and Aerosols
           -> UKCA Chemistry Coupling
             -> MODE Aerosols in Radiation Scheme
Entry box: Directory path to UKCA_RADAER input files:
 Job xlqee: Entry is set to '/work/n02/n02/ukca/spectral/radv2.1'
 Job xnigc: Entry is set to '/projects/ukca/inputs/spectral/radv2'
Entry box: Look-up table for accumulation-mode aerosols in the longwave:
 Job xlqee: Entry is set to 'nml_ac_lw_new'
 Job xnigc: Entry is set to 'nml_ac_lw'
Entry box: Look-up table for accumulation-mode aerosols in the shortwave:
 Job xlqee: Entry is set to 'nml_ac_sw_new'
 Job xnigc: Entry is set to 'nml_ac_sw'
Entry box: Look-up table for coarse-mode aerosols in the longwave:
 Job xlqee: Entry is set to 'nml_cr_lw_new'
 Job xnigc: Entry is set to 'nml_cr_lw'
Entry box: Look-up table for coarse-mode aerosols in the shortwave:
 Job xlqee: Entry is set to 'nml_cr_sw_new'
 Job xnigc: Entry is set to 'nml_cr_sw'
Entry box: File of precomputed values:
 Job xlqee: Entry is set to 'pcalc_hadgem_v2.1.ukca'
 Job xnigc: Entry is set to 'pcalc_hadgem_v2.ukca'

Difference in window atmos_STASH_UserProgs
 -> Model Selection
   -> Atmosphere
     -> STASH
       -> Initialisation of User Prognostics
Differences in Table Specify Initialisation Option
 38,95c38,95
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comment:4 Changed 2 months ago by ajamieson

Thanks for the help Luke.

comment:5 Changed 2 months ago by luke

Resolution set to fixed
Status changed from new to closed

No problem. I'll close this ticket now. Re-open if you have any issues related to this, or open a new one if you have any other issues.

Thanks,
Luke

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