Changes between Version 9 and Version 10 of Docs/Polaris


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Timestamp:
14/03/13 17:33:46 (6 years ago)
Author:
grenville
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  • Docs/Polaris

    v9 v10  
    3939 
    4040== 3 Your Setup on Polaris == 
    41 Copy the UM Setup section from /home/polaris_lds1/ldsgl/.bashrc to your .bashrc (note if you wish to use utilities for a version of the UM other than 6.6.3, you will need to source the appropriate .umsetvars file) 
     41Copy the UM Setup section from /home/polaris_lds1/ldsgl/.bashrc to your .bashrc (note, if you wish to use utilities for a version of the UM other than 6.6.3, you will need to source the appropriate .umsetvars file) 
    4242 
    4343== 4 Model Build Information and UMUI Settings == 
     
    4646{{{-i8 -r8 -fp-model precise -O1}}} 
    4747 
    48 These and all other Polaris build settings are picked up by FCM by navigating to ''model selection -> sub-model independent -> FCM configuration ->  FCM configuration variables'' and setting the variable '''UM_SVN_BIND''' to  
     48To ensure that these and all other Polaris build settings are picked up by FCM, navigate to ''model selection -> sub-model independent -> FCM configuration ->  FCM configuration variables'' and set the variable '''UM_SVN_BIND''' to  
    4949 
    5050{{{fcm:um_br/dev/ros/hg6.6.3_polaris_machine_cfg/src/configs/bindings}}} 
     
    6464=== General UMUI Settings === 
    6565 
    66 Navigate to ''model selection -> sub-model independent -> FCM configuration ->  FCM configuration variables'' 
    67 Experience will help determine the most convenient places to extract the model to. Set '''UM_ROUTDIR''' to be your user directory on /nobackup, however, note that files left in this directory may be marked for deletion in accordance with Polaris data policy. 
     66Navigate to ''model selection -> sub-model independent -> FCM configuration ->  FCM configuration variables''. 
     67Experience will help determine the most convenient places where the extracted model should reside. Explicitly set '''UM_ROUTDIR''' to be your user directory on /nobackup, however, note that files left in this directory may be marked for deletion in accordance with Polaris data policy. 
    6868 
    69 Navigate to model ''selection -> user information and target machine -> general details'' 
     69Navigate to ''model selection -> user information and target machine -> general details'' 
    7070Set '''User-id''' to be your Polaris id. The '''Tic Code''' is not relevant to Polaris. We have not tested end of run email notification. 
    7171 
    72 Navigate to ''selection -> user information and target machine -> target machine'' 
     72Navigate to ''model selection -> user information and target machine -> target machine'' 
    7373Chose 'other' for the '''Compile, Link and Run the job''' option, and set the '''Other machine name''' to polaris.leeds.ac.uk 
    7474 
    75 Navigate to ''selection -> sub-model independent -> job submission, resources and resubmission pattern'' 
     75Navigate to ''model selection -> sub-model independent -> job submission, resources and resubmission pattern'' 
    7676Choose the option ''''qsub' for SGE(SGI)''' for the submission method. The '''Job memory limit''' is not relevant (all jobs currently request the default memory/core of 4GB). 
    7777 
    7878'''Gotchas for HadGEM2-AMIP''' 
    79 At two places in the UMUI files need to be specified by full paths: navigate to ''model selection -> atmosphere -> ancillary and input data files -> climatologies and potential climatologies -> natural climate forcing'' and specify /home/polaris_lds1/earhum/hg6.6.3/HG2AMIP_ancils as the path for the '''solar forcing'''  and '''volcanic forcing''' files. 
     79At two places in the UMUI, files need to be specified by full paths: navigate to ''model selection -> atmosphere -> ancillary and input data files -> climatologies and potential climatologies -> natural climate forcing'' and specify /home/polaris_lds1/earhum/hg6.6.3/HG2AMIP_ancils as the path for the '''solar forcing'''  and '''volcanic forcing''' files.