Changes between Version 2 and Version 3 of Projects/INSPECT/NEMOTAM


Ignore:
Timestamp:
12/08/13 16:27:47 (8 years ago)
Author:
annette
Comment:

Legend:

Unmodified
Added
Removed
Modified
  • Projects/INSPECT/NEMOTAM

    v2 v3  
    11== NEMOAM test run ==  
    22 
    3 ''6 August 2013'' 
     3''12 August 2013'' 
    44 
    5 A simple ORCA2 NEMO/NEMOTAM pair of jobs have been run, following these instructions: http://www.nemo-ocean.eu/Using-NEMO/User-Guides/Basics/Tangent-and-Adjoint-quick-start-guide 
     5We installed and ran the example ORCA2 NEMO-TAM experiment provided with the NEMO 3.4.1 source code, following the instructions on the main NEMO website: http://www.nemo-ocean.eu/Using-NEMO/User-Guides/Basics/Tangent-and-Adjoint-quick-start-guide 
     6 
     7Information and instructions for running locally are given below:  
     8* Input data 
     9* Timing runs 
     10* Instructions 
    611 
    712 
     
    914 
    1015The input files are located here: 
    11 {{{/net/jasmin/users/annette/nemotam/ORCA2_LIM_nemo_v3.4}}} 
     16{{{/net/jasmin/users/annette/nemo/ORCA2_LIM_nemo_v3.4}}} 
    1217 
    13 This is the ORCA2_LIM v3.4 data set mentioned here (although there was no README file included): 
     18This is the ORCA2_LIM v3.4 data set mentioned here: 
    1419  http://www.nemo-ocean.eu/Using-NEMO/Configurations/ORCA2_LIM-and-AGRIF-demonstrator 
    1520 
     
    4045To run a single processor experiment. Instructions to be updated for building with fcm make.  
    4146 
    42 === Step 1) Set up environment for um1 and um2 === 
     47=== Step 1) Set up environment for um[12] === 
    4348 
    44 a) Add to .profile / .kshrc:  
     49a) To ensure the supporting software is available, add the following lines to your local .kshrc file:  
    4550 
    46 {{{     
    47 ulimit -c unlimited 
    48 ulimit -s unlimited 
    49 . /net/jasmin/users/simon/intel/composerxe\-2011.4.191/bin/compilervars.sh intel64 
    50 export PATH=/home/jeff/linux_x86_64/mpich2-install/bin:$PATH 
    51 export LD_LIBRARY_PATH=/panfs/jasmin/users/annette/netcdf/intel/lib:$LD_LIBRARY_PATH    
    52  }}} 
     51{{{  
     52if [ `uname -n` = 'um1' -o `uname -n` = 'um2' ] 
     53then  
    5354 
    54 make sure you have access to an fcm - the following path will change soon but works for now 
     55  ulimit -c unlimited 
     56  ulimit -s unlimited 
     57  . /net/jasmin/users/simon/intel/composerxe\-2011.4.191/bin/compilervars.sh intel64 
     58  export PATH=/home/jeff/linux_x86_64/mpich2-install/bin:$PATH 
     59  export LD_LIBRARY_PATH=/panfs/jasmin/users/annette/netcdf/intel/lib:$LD_LIBRARY_PATH    
     60  export PATH=/net/jasmin/users/annette/fcm/bin:$PATH 
     61  export PATH=/net/jasmin/users/annette/nemo/rebuild:$PATH 
    5562 
    56 {{{    
    57 export PATH=$PATH:/home/cascade/fcm-1-5-vanilla/bin    
     63fi 
    5864}}} 
    5965 
     
    7278}}} 
    7379 
    74 c) Edit file to use own username and directory on um servers.  
     80c) Edit file to use own username and directory on um servers: 
     81{{{ 
     82mirror.target = <user>@<server>:<path-on-remote-machine>/v3.4.1_test 
     83}}}  
    7584 
    7685d) Run extract (ignore warnings about SYMLINKS) 
     
    7887fcm make  
    7988}}} 
     89This extracts the v3.4.1 branch and copies over to your data-space.  
    8090 
    8191=== Step 3) Build ORCA2 NEMO and NEMOTAM on um servers ===