Changes between Initial Version and Version 1 of Projects/INSPECT/ShaCoNEMO-ORCA1-ARCHER


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Timestamp:
15/11/16 16:29:51 (4 years ago)
Author:
annette
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  • Projects/INSPECT/ShaCoNEMO-ORCA1-ARCHER

    v1 v1  
     1= IPSL ORCA1 configuration on ARCHER =  
     2 
     3Instructions for running the ShaCoNEMO ORCA1 setup on ARCHER.  
     4 
     5== Access ==  
     6 
     7You need to register with the NEMO website to extract the code:  
     8http://www.nemo-ocean.eu/user/register 
     9 
     10The ORCA1 configuration is held in the ShaCoNEMO repository. You need to register for access, but this uses the same username and password as main NEMO repository.  
     11 
     12To create a branch to hold your code changes on the NEMO repository, you will need additional permissions.  
     13 
     14== References == 
     15 
     16The main NEMO website gives more general instructions on building & running NEMO with the standard confgurations included in the code: 
     17http://www.nemo-ocean.eu/Using-NEMO/User-Guides/Basics/NEMO-Quick-Start-Guide 
     18 
     19ORCA1_LIM3_PISCES configuration is documented on the ShaCoNEMO (Shared Configuration) wiki:  
     20https://forge.ipsl.jussieu.fr/shaconemo/wiki/README_ORCA1_LIM3_PISCES 
     21 
     22* LIM3 is the sea-ice  
     23* PISCES is the biogeochemical model  
     24 
     25NEMO uses an external library to handle model output diagnostics (XIOS), documented here:  
     26http://forge.ipsl.jussieu.fr/ioserver/wiki 
     27 
     28== Code versions ==  
     29 
     30Here we have used the following versions, based on the NEMO/ShaCoNEMO pages:  
     31 
     32* XIOS-1.0 r703 
     33* NEMO_3.6_stable r6969 
     34* ShaCoNEMO r60 
     35* ORCA1 input data set v9 
     36 
     37Note: Although XIOS-2.0 is now recommended, revision 932 which is suggested for ORCA1 gave a link-time error which was not investigated.  
     38 
     39== Code extract ==  
     40 
     41On ARCHER, navigate to the directory that you wish to hold the code. You may wish to use the home directory as this is backed up.  
     42 
     43To checkout to a directory called `NEMOGCM_3.6_r6969`, run the following, replacing `mylogin` with your NEMO username (you will be prompted for your password):  
     44{{{ 
     45svn --username "mylogin" co -r6969 http://forge.ipsl.jussieu.fr/nemo/svn/branches/2015/nemo_v3_6_STABLE/NEMOGCM NEMOGCM_3.6_r6969 
     46}}} 
     47 
     48This creates an subversion "working copy". Running `svn info` lists the revision that was checked out, and `svn diff` lists the changes that have been made.  
     49 
     50Then setup and extract the ORCA1 configuration:  
     51{{{ 
     52cd NEMOGCM_3.6_r6969/CONFIG 
     53}}}  
     54 
     55Then edit `cfg.txt` to add the line: 
     56{{{ 
     57ORCA1_LIM3_PISCES OPA_SRC LIM_SRC_3 NST_SRC TOP_SRC 
     58}}}  
     59 
     60Then checkout the ORCA1 configuration:  
     61{{{ 
     62svn --username "mylogin" co http://forge.ipsl.jussieu.fr/shaconemo/svn/trunk/ORCA1_LIM3_PISCES 
     63}}}  
     64 
     65Use same username and password as main NEMO website.  
     66 
     67 
     68