Changes between Version 3 and Version 4 of Projects/INSPECT


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Timestamp:
08/08/13 13:52:39 (8 years ago)
Author:
grenville
Comment:

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  • Projects/INSPECT

    v3 v4  
    1616a) Add to .profile / .kshrc:  
    1717 
     18{{{     
    1819ulimit -c unlimited 
    1920ulimit -s unlimited 
    2021. /net/jasmin/users/simon/intel/composerxe\-2011.4.191/bin/compilervars.sh intel64 
    2122export PATH=/home/jeff/linux_x86_64/mpich2-install/bin:$PATH 
    22 export LD_LIBRARY_PATH=/panfs/jasmin/users/annette/netcdf/intel/lib:$LD_LIBRARY_PATH 
     23export LD_LIBRARY_PATH=/panfs/jasmin/users/annette/netcdf/intel/lib:$LD_LIBRARY_PATH    
     24 }}} 
    2325 
    24 make sure you have access to an fcm - the following path will change soon but works for noe 
     26make sure you have access to an fcm - the following path will change soon but works for now 
    2527 
    26 export PATH=$PATH:/home/cascade/fcm-1-5-vanilla/bin 
     28{{{    
     29export PATH=$PATH:/home/cascade/fcm-1-5-vanilla/bin    
     30}}} 
    2731 
    2832 
     
    3034 
    3135a) Create a directory to extract NEMO code to eg: 
    32      mkdir ~/nemotam/v3.4.1_test 
    33      cd ~/nemotam/v3.4.1_test 
     36{{{ 
     37mkdir ~/nemotam/v3.4.1_test 
     38cd ~/nemotam/v3.4.1_test 
     39}}} 
    3440 
    3541b) Copy fcm configuration file:  
    36      cp ~annette/nemotam/v3.4.1_test/fcm-make.cfg .  
     42{{{ 
     43cp ~annette/nemotam/v3.4.1_test/fcm-make.cfg .  
     44}}} 
    3745 
    3846c) Edit file to use own username and directory on um servers.  
    3947 
    4048d) Run extract (ignore warnings about SYMLINKS) 
    41      fcm make  
     49{{{ 
     50fcm make  
     51}}} 
    4252 
    4353 
     
    4555 
    4656a) Go to directory created on um eg:  
    47      cd /net/jasmin/users/annette/nemotam/v3.4.1_test/extract 
     57{{{ 
     58cd /net/jasmin/users/annette/nemotam/v3.4.1_test/extract 
     59}}} 
    4860 
    4961b) Copy compilation configuration file for um machines:  
    50      cd nemo/NEMOGCM/ARCH 
    51      cp /net/jasmin/users/annette/nemotam/arch-ifort_linux_um.fcm . 
     62{{{ 
     63cd nemo/NEMOGCM/ARCH 
     64cp /net/jasmin/users/annette/nemotam/arch-ifort_linux_um.fcm . 
     65}}} 
    5266 
    5367c) Build:  
    54      cd ../CONFIG 
    55      makenemo –m ifort_linux_um –r ORCA2_TAM -n MY_ORCA2_TAM 
     68{{{ 
     69cd ../CONFIG 
     70makenemo –m ifort_linux_um –r ORCA2_TAM -n MY_ORCA2_TAM 
     71}}} 
    5672      
    5773 
     
    5975 
    6076a) Go to experiment directory created in build steps:  
    61      cd MY_ORCA2_TAM/EXP00  
     77{{{  
     78cd MY_ORCA2_TAM/EXP00  
     79}}} 
    6280 
    6381b) Copy over example run script:  
    64      cp /net/jasmin/users/annette/nemotam/run_opa.ksh .  
     82{{{ 
     83cp /net/jasmin/users/annette/nemotam/run_opa.ksh .  
     84}}} 
    6585   change CCFGDIR to pint to your MY_ORCA_TAM 
    6686 
    6787c) Run model:  
    68      ./run_opa.ksh  
     88{{{ 
     89./run_opa.ksh  
     90}}} 
    6991   Output in:  
    70      ./Run1/ 
     92{{{ 
     93./Run1/ 
     94}}} 
    7195 
    7296 
     
    7498 
    7599a) Go back to experiment directory EXP00  
    76      cd ../   
     100{{{ 
     101cd ../   
     102}}} 
    77103 
    78104b) Copy over example run script:  
    79      cp /net/jasmin/users/annette/nemotam/run_tam.ksh .  
     105{{{ 
     106cp /net/jasmin/users/annette/nemotam/run_tam.ksh .  
     107}}} 
    80108   change CCFGDIR to pint to your MY_ORCA_TAM 
    81109 
    82110c) Run TAM model:  
    83      ./run_tam.ksh  
     111{{{ 
     112./run_tam.ksh  
     113}}} 
    84114   Output in same place as main model:  
    85      ./Run1/ 
     115{{{ 
     116./Run1/ 
     117}}} 
    86118